Environmental Genetics

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Doctoral Course (Doctoral Schools ABIES and GAIA)

Environmental Genetics

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Objectives Schedule

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Title †† Videos††
General introduction on animal adaptation.
Tatiana Zerjal (INRA/AgroParisTech-GABI, Jouy-en-Josas/Paris)

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Models of population genetics and measures of the neutral diversity. A reminder. (part 1)
Renaud Vitalis (INRA-CBGP, Montpellier)


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Models of population genetics and measures of the neutral diversity. A reminder.† (part 2)
Renaud Vitalis (INRA-CBGP, Montpellier)
Selection footprints. General introduction.
Renaud Vitalis (INRA-CBGP, Montpellier)


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Selection footprints. 1 - PCADAPT
Keurcien Luu (TIMC-IMAG, Grenoble)

Selection footprints. 2 - SelEstim
Renaud Vitalis (INRA-CBGP, Montpellier)

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The HapFLK method
Simon Boitard (INRA-GenPhyse, Toulouse)


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Multivariate Data Analysis: an introduction with a focus on Principal Component Analysis on SNP data.
Denis LaloŽ, Tatiana Zerjal, Xavier Rognon (INRA/AgroParisTech-GABI, Jouy-en-Josas/Paris)

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Multivariate Data Analysis: Geometrical aspects - the inertia.
Denis LaloŽ, Tatiana Zerjal, Xavier Rognon (INRA/AgroParisTech-GABI, Jouy-en-Josas/Paris)

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Links with environmental covariables. Factorial methods. (PCAIV, Redudancy analysis)
Denis LaloŽ (INR
A/AgroParisTech-GABI, Jouy-enn-Josas/Paris)

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Links with environmental covariables. BayPass.
Mathieu Gautier (INR
A-CBGP, Montpellier)
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Links with environmental covariables. Factor analysis. (LFMM/LEA)
Olivier FranÁois (TIMC-IMAG, Grenoble
) [Speaker: Denis LaloŽ]
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Functional anlaysis. Biological interpretation of selection footprints.
Laurence Flori (INRA-GABI, Jouy-en-Josa / CIRAD-INTERTRYP, Montpellier)
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